Latest MicrobiomeAnalyst topics

Topic	Replies	Views	Activity
Dropdown options Taxonomy level not appearing	1	296	December 7, 2022
Error when trying to run Stacked bar/area plot stacked-bar	6	567	December 1, 2022
"Sample names match (metadata vs. OTU table): No" issue data-input	2	987	March 3, 2023
An error occurred when the template file was used to check data integrity“The tip lables of the tree are not matched with the OTU table” data-input	2	379	April 30, 2023
Will MicrobiomeAnalystR package be upgraded?	1	298	November 23, 2022
Using MicrobiomeAnalyst to analyse ITS dada! its-rrna , fungi	2	401	November 23, 2022
Invalid phylogenetic tree file when running beta diversity test with UniFrac distance beta-diversity	1	735	November 21, 2022
Why the heat tree analysis is missing?	1	339	November 15, 2022
How is the the heatmap clustering figure normalized? heatmapview , heatmap	4	968	March 13, 2023
Heatmap data-processing	3	573	November 8, 2022
Sample data are not ordered by days time-series , group-order	1	526	October 25, 2022
Importing phyloseq.rds data	5	785	October 19, 2022
How were the taxon sets collected? enrichment , taxon-set , taxaupload , tsealibview	0	547	June 26, 2022
Why by default, only the top 20% of features are used for PCoA analysis (PPD module)? dimension-reduction , metaprojection	0	448	June 26, 2022
What is partial correlation? correlation , sparcc	0	554	June 26, 2022
How does metagenomeSeq works?	0	416	June 26, 2022
How to interpret the Good's coverage (rarefaction curve analysis)? composition , alpha-diversity , rarefaction_curve	0	2827	June 26, 2022
How to use the metabolic network visualization in MicrobiomeAnalyst (association analysis)? metagenomic-shotgun , function , keggmapview	0	568	June 12, 2022
What are the main differences between PICRUSt and Tax4Fun approaches? 16s-marker-gene , function , tax4fun	0	721	June 12, 2022
How does MicrobiomeAnalyst perform user data projection with the reference study datasets (PPD module)? database , library , dataselectview	0	525	June 26, 2022
Are non-human data-sets available? database , library , dataselectview	0	535	June 26, 2022
How to interpret the graphical summary of Random Forests plot? biomarker , classification , randomforest	0	608	June 26, 2022
What is a phylogenetic tree and how to interpret it? composition , unifrac , phylogenetic_tree	0	697	June 26, 2022
What are the differences between SparCC, Pearson, Spearman and Kendall correlation? correlation , sparcc	0	1333	June 11, 2022
Which option should I choose to perform data filtering? data-processing , datafilterview	0	741	June 26, 2022
How to discover patterns of interest in my data using PCoA/NMDS? community-profiling , beta-diversity , pattern_search	0	924	June 26, 2022
Why can I not use UniFrac distance analysis for my data? phylogenetic_tree	0	775	June 26, 2022
What are the differences of the two statistical models (fitFeature vs fitZig) in metagenomeSeq? comparative-analysis , metagenomeseq	0	701	June 26, 2022
Which version of the Greengenes database is used for PICRUSt-based analysis? functional-analysis , picrust	0	528	June 26, 2022
What are the differences between using KEGG KO or COG IDs in MicrobiomeAnalyst? metagenomic-shotgun , functional-analysis , functional_stackplot	0	2066	June 12, 2022