Since the recent new Microbiomeanalyst format, the LefSe function in MDP does not show a result table, only the graphical summary (it says “no records found”).
If I do the LefSe after doing one of the univariate analyses first (for example EdgeR), a result table appears in LefSE but is actually the one from the univariate analysis. I use the same files I used in the former format of Microbiomeanalyst where LefSe worked fine. Seems to be a bug.
Thanks
Thank you for the note. The issue should be fixed now