Hello, when looking through the data for DE genes, I’ve noticed that they don’t change between each comparison. I am working with the “Exposure” DE analysis, so we are comparing different treatments to a control sample. The Log2FC number does change with each comparison (ie control vs Trt A, Control vs. Trt B), but the p values and adjusted p values do not change. Is this to be expected? I am used to obtaining a different p value for each comparison. Thank you!
Stacey