I just updated to R vs. 4.5.0 on Ubuntu 24.04, requiring pretty much a reinstall of all my packages. I tried to install MetaboAnalystR 4.0.0, but got:
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘MetaboAnalystR’ in dyn.load(file, DLLpath = DLLpath, …):
unable to load shared object ‘/home/michael/R/x86_64-pc-linux-gnu-library/4.5/00LOCK-MetaboAnalystR/00new/MetaboAnalystR/libs/MetaboAnalystR.so’:
/home/michael/R/x86_64-pc-linux-gnu-library/4.5/00LOCK-MetaboAnalystR/00new/MetaboAnalystR/libs/MetaboAnalystR.so: undefined symbol: match5
Error: loading failed
Execution halted
ERROR: loading failed
I installed it without issue on the previous couple of versions of R (4.4.3 most recently) using:
devtools::install_github("xia-lab/MetaboAnalystR", build = TRUE, build_vignettes = TRUE, build_manual =T)
It doesn’t matter whether I build the vignettes; I still get the error. I will admit I haven’t done a lot to try a track down the source of the error (a project for tomorrow?), but I thought I would pass this on in case it’s an issue with the newest version of R.
Thanks for making and maintaining a great package and a great suite of software.