2- and 3- phosphoglyceric acid are not taking into account into the pathway analysis

MetaboAnalyst
1

Good afternoon,

I am having trouble with the compounds 2- and 3-phosphoglyceric acid. While they are recognized by the system, when looking into the pathway analysis, most specifically into glycolisis/glyconeogenesis pathways, they do not show up but rather the compound is presented in black as if they werent there.

Can you help me?

Thanks

2

Please refer to this post.

If this does not answer your question, please provide more details following our post guide

3

Hi again,

I have taken a look at the page you mentioned but I think that those compounds are included in the pathway libraries the error must be other ¿no? The compounds are recognized although they have no KEG associated:

image

And then if you look into the pathway of glycolisis they remain as if the compound was not there (CD00631; 2-Phospho-D-Glycerate, and the same for CD00197, 3-Phospho-D-Glycerate) as you can see in the next image.

image
image610×517 30.8 KB

We have tried changing the name to the exact name that is shown in the pathway 2-phospho-D-glycerate, yet the same error happens, it is recognized as a metabolite but it is later not taken into accound on the pathway analysis, more specifically in glycolisis glyconeogenesis pathways.

Is it any way to solve this?

4

I refer to the above