During peak picking and alignment, a valid peak group should appear in 50% of the data in at least one group in order to remain.
The underlying R code snippet:
#'@param minfrac, define the minimum fraction of samples necessary in at least one of the sample groups for #'it to be a valid group #'@param minsamp, define the minimum number of samples necessary in at least one of the sample groups for #'it to be a valid group # minfrac = 0.5, minsamp = 1, …. # test for each grouped features (i.e. a single peak before alignment) # default require at least half of samples per group if (! any(gcount >= classnum*minfrac & gcount >= minsamp)) next # ignore ...