Is the posted tutorial for shotgun metagenomic analysis still accurate? I have abundance data that I need to analyze statistically and visualize. Every time I upload my CSV file of abundances and metadata, I never see the tabs that the SDP file has in page 17 of the document. I don’t see that page of options, it just takes me directly to functional analysis but I need statistical analysis like alpha and beta diversity and cannot find it. Please offer assistance. Also, should I be uploading only my species level abundance or all taxonomic levels?
We provide many tutorials such as Nature Protocol. If this does not answer your question, you should read and follow this post guide