Hello,
I am redoing a pathway analysis which I did using MetaboAnalst 5.0. My issue when rerunning the analysis in MetaboAnalyst6.0 is that many of the HMIDs (lipids, amino acids) are not recognized by metaboAnalyst 6.0.
Is it possible to have access to MetaboAnalyst 5.0 until the problem with library is solved?
Thank you very much.
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Can you provide more details about those compounds? We will see what is the cause. If the IDs were retired by the HMDB/KEGG, you need to update your ID to the latest HMDB version, there is no much we can do from our side.
Hello,
thank you very much for your reply! For my post from January 22 I was able to run the analysis with MetaboAnalyst 5.0 again.
However, I am running a different analysis now and I encounter the same problem. Here is the list of the HMDB IDs which I am using. When I load the same IDs to MetaboAnalyst 5.0 it does recognize almost all metabolites.
Please find the name map attached.
name_map.txt (5.3 KB)