Dear developers, I’m using R code of MetaboAnalystR package for Function analysis ( From MS peaks to Pathways), I read the help document, but i still have no idea about the .txt formatted input reference file (“mummichog_input_your_date.txt”).
That should be a typo “mummichog_input_your_data.txt”, referring to the path to your input data file for mummichog. This data should be generated from the first command in your screenshot. You can explore the web platform to learn the meaning for each step in the workflow.