How do you properly interpret NES value in functional analysis? If comparing 2 groups and have a positive NES value, is the top group chosen in the data editor what that pathway is enriched in? Similarly, if a negative NES does this mean this pathway is down in the top group listed as compared to the second group?
Thank you. I have been trying to run mummichog instead, but when it loads the results it does not produce a scatterplot or heat map and only leaves a white space where those should be. Have there been reported errors running mummichog in functional analysis from other users?