Hi,
I’m entering L-Serine as a metabolite compound name for the ORA analysis. This gets switched to Serine during the name standardization step. I then select KEGG as the db for the pathway based ORA analysis, but KEGG uses L-Serine as the metabolite name in the pathways, so no overlap is found for this metabolite. I’ve also tried entering the KEGG ID C00065, which does not solve the problem.
Is there a way for me to fix this?
Thanks,
Lina
Thanks for the note. We notice the issue after we update the HMDB and KEGG to their latest versions. We are working on synchronizing these two ID systems …
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Hello! They have been synchronized and should work properly now.
Wonderful thank you!
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