Feature Box Plot uses only raw reads, not rarefied (FDR) ones

Hi everyone and thank you for reanding.

I have a problem with both, online and R version of MicrobiomeAnalyst.

I have perform rarefaction to minimum library size (10.000 reads) on my samples, but when I check the results table of LEfSE analisys, the box plots of each feature gime me abundance counts higher than 10.000.

I am sure that I am using the filtered counts for LEfSE analisys, at least it is what is clicked in the chart. Also on R version I am usin “fdr” argument.

Can someone help me?

Thank you.

Please read and follow our post guidelines