I’m getting this error in the peak picking module with data that I have used before and worked fine.
ERROR:“NAnnotatedDataFrame” is not a defined class
Error in ImportRawMSData(path = “upload/”, plotSettings = SetPlotParam(Plot = TRUE, :
EXCEPTION POINT CODE: RMS2
Calls: ExecutePlan … perform.plan → perform.command → eval → eval → ImportRawMSData
In addition: Warning message:
In ImportRawMSData(path = “upload/”, plotSettings = SetPlotParam(Plot = TRUE, :
No metadata provided, all files in one sub-folder will be considered a group!
Execution halted
srun: error: xiaserver10: task 0: Exited with exit code 1
These are the parameters I’m using:
Peak_method centWave
RT_method loess
ppm 5
min_peakwidth 5
max_peakwidth 30
mzdiff 0.05
snthresh 10
noise 1000
prefilter 3
value_of_prefilter 100
bw 10
minFraction 0.8
minSamples 1
maxFeatures 100
fitgauss FALSE
verbose.columns FALSE
mzCenterFun wMean
integrate 1
extra 1
span 0.25
smooth loess
family gaussian
polarity positive
perc_fwhm 0.6
mz_abs_iso 0.005
max_charge 2
max_iso 2
corr_eic_th 0.85
mz_abs_add 0.001
adducts NULL
rmConts TRUE
BlankSub FALSE