I’m having trouble with enrichment analysis, it seems to be a network issue, but strangely, smpdb succeeded while kegg failed.
How can I resolve this?
Could please provide the kegg_pathway.qs file?
Code:
rm(“mSet”)
mSet<-InitDataObjects(“conc”, “msetora”, FALSE, 150)
cmpd.vec<-c(kegg)
mSet<-Setup.MapData(mSet, cmpd.vec);
mSet<-CrossReferencing(mSet, “kegg”, mixed = T);
mSet<-CreateMappingResultTable(mSet)
mSet<-SetMetabolomeFilter(mSet, F);
mSet<-SetCurrentMsetLib(mSet, “kegg_pathway”, 2);
mSet<-CalculateHyperScore(mSet)
[1] “Loaded files from MetaboAnalyst web-server.”
[1] “Failed to connect to the API Server!”
[1] “Error! Mset ORA via xialab.ca/api unsuccessful!”