Hi, sorry to trouble you! I am using “MetaboAnalystR” package.
I download it and install, but when I am trying to use “joint analysis”, I can’t get the database.
I thought these databases were in the downloaded installation package, but when I went into the installation package and searched all the directories, but I didn’t see the data.
This is the download address of my installation package under Linux:
And this is the download address of my installation package under windows:
I went to check the source code to see where the database can be downloaded,
the code are as below:
url.pre ← “https://github.com/xia-lab/MetaboAnalystR3.0/raw/master/inst/database/sqlite/GeneID_25Species_JE/”
(according to the code, this url is on the line 198 of general_data_utils.R)
and as you can see the “url.pre” doesn’t exist.
Then I go to google search, I found that this website seems to have these database:
xia-lab/MetaboAnalystR3.0 source listing,
but the sqlite database files in that url also doesn’t exist.
those databases that I can’t find is as follows:
docs/MetaboAnalystR_3.0.0_manual.pdf
docs/MetaboAnalystRlogo.png
docs/log_v3.0.png
inst/CITATION
inst/database/sqlite/GeneID_25Species_JE/.DS_Store
inst/database/sqlite/GeneID_25Species_JE/ath_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/bsu_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/bta_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/cel_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/cjo_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/dme_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/dre_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/eco_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/gga_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/hsa_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/mlo_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/mmu_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/mtb_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/osa_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/pae_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/pfa_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/ppu_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/rno_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/sau_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/sce_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/smm_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/ssc_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/syf_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/tbr_genes.sqlite
inst/database/sqlite/GeneID_25Species_JE/tma_genes.sqlite
inst/lists/ions.csv
inst/lists/neutraladdition.csv
inst/lists/neutralloss.csv
inst/rules/extended_adducts_neg.csv
inst/rules/extended_adducts_pos.csv
inst/rules/primary_adducts_neg.csv
inst/rules/primary_adducts_pos.csv
So the question is that, where can I download those databases?
Looking forward to your reply. Thank you very much!