Hi all,
I am using the Batch Correction tool of Metaboanalyst. Does anyone know if the Excel that results after the batch correction is the one that it used to generate the PCA plots? Or normalization/transformation/scaling was applied to this dataset for the PCA shown? And if yes where can I find the parameters used? I am trying to replicate the PCA from the excel dataset and I am not getting the exact PCA. If anyone with experience in Batch Correction could help, that would be awesome. I have sent an email to the Metaboanalyst support group, but received zero answer.
Thanks,
Georgia