- PPI: IntAct, InnateDB, STRING, HuRI
- TF-gene regulation: JASPAR, ENCODE, TRRUST
- miRNA-gene regulation: miRBase, TarBase
- Protein-metabolite interaction: KEGG, Recon 2
- MS annotation: HMDB, PubChemLite, KEGG.
- Taxa metabolic potential prediction: EMBL and AGORA genome-scale metabolic models (GEMs).
- SNP annotation: PhenoScanner, VEP, ADmiRE and SNP2TFBS.
More details on these databases are provided in the analysis page.