ExpressAnalyst currently has reference genomes for 17 species.
| Species | Transcripts | ID type | Filename |
|---|---|---|---|
| H. sapiens (human) | 199,240 | Ensembl transcripts | Homo_sapiens.GRCh38.cdna.all.fa.gz |
| M. musculus (mouse) | 117,486 | Ensembl transcripts | Mus_musculus.GRCm39.cdna.all.fa.gz |
| R. norvegicus (rat) | 31,715 | Ensembl transcripts | Rattus_norvegicus.Rnor_6.0.cdna.all.fa.gz |
| C. elegans (roundworm) | 36,172 | WormBase transcripts | Caenorhabditis_elegans.WBcel235.cdna.all.fa.gz |
| D. melanogaster (fruitfly) | 31,089 | Ensembl transcripts | Drosophila_melanogaster.BDGP6.32.cdna.all.fa.gz |
| D. rerio (zebrafish) | 57,775 | Ensembl transcripts | Danio_rerio.GRCz11.cdna.all.fa.gz |
| S. cerevisiae (yeast) | 6612 | Ensembl transcripts | Saccharomyces_cerevisiae.R64-1-1.cdna.all.fa.gz |
| B. taurus (cow) | 38,030 | Ensembl transcripts | Bos_taurus.ARS-UCD1.2.cdna.all.fa.gz |
| G. gallus (chicken) | 28,756 | Ensembl transcripts | Gallus_gallus.GRCg6a.cdna.all.fa.gz |
| C. japonica (japanese quail) | 49,197 | NCBI | Coturnix_japonica_2.1_cds_from_genomic.fa.gz |
| A.thaliana (Arabidopsis) | 55,854 | TAIR transcripts | Araport11_genes.201606.cdna.fasta.gz |
| P. promelas (fathead minnow) | 57,299 | RefSeq transcripts | GCF_016745375.1_EPA_FHM_2.0_rna.fna.gz |
| O. mykiss (rainbow trout; Ensembl) | 107,418 | Ensembl transcripts | Oncorhynchus_mykiss.Omyk_1.0.cdna.all.fa.gz |
| O. mykiss (rainbow trout; NCBI) | 79,244 | RefSeq transcripts | GCF_002163495.1_Omyk_1.0_rna.fna.gz |
| P. auritus (double crested cormorant) | 250,372 | De novo assembled transcriptome | DCC.transcriptome_jose.fasta.gz |
| L. pipiens (Northern leopard frog) | 741,473 | De novo assembled transcriptome | NLF.transcriptome_jose.fasta.gz |
| R. subcapitata | 13,383 | JGI transcripts | Rapsub1_GeneCatalog_transcripts_20191119.nt.fasta |
| D. magna | 26,646 | Ensembl transcripts | Daphnia_magna.daphmag2.4.cdna.all.fa |
| C. dilutus | 31,132 | De novo assembled transcriptome | C.dilutus.contigs.fasta |