Shotgun raw data - whole genome sequences

MicrobiomeAnalyst
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1

Dear all,

I would like to know if the microbiome analyst pipeline can process raw sequence data from Shotgun analysis. Or if they just follow the output from other sources. If this is the case can anyone recommend me a pipeline to process this data? I have 6 samples of shotgun analysis composing a total of 38Gb.

Regards,

Andre

2

Yes, support for taxonomy classification and functional analysis is coming soon! Unfortunately, the public server cannot handle this sample size due to resource limitations. You can use our R package or the Pro version instead.