hi bro.
I am working on MicrobiomeAnalyst in R studio.
However, although there are no other problems, a problem occurs in the network plot.
My use command
mbSet ← PrepareCorrExpValues(mbSet, “GROUP”, “Genus”, “dbgr”, “reingold-tilford”, “all”, “0.05”)
mbSet ← PerformNetworkCorrelation(mbSet,“Genus”, “secom_p1”, “expr”,100, 0.05, 0.3, “mean”, “Genus_corr”)
If this problem is solved, everything will be perfect.
The problem is as follows:
-
They said they couldn’t find the function “PrepareCorrExpValues”, so they proceeded by entering the function manually.
(Reference: https://github.com/xia-lab/MicrobiomeAnalystR/blob/master/R/mdp_utils.R)
Then it works normally. -
After this, proceed with “PerformNetworkCorrelation”, but the following error occurs.
“2 nodes produced errors; first error: object ‘.doSnowGlobals’ not found”
Please suggest the cause of the problem and a solution.
Thank you in advance.