R command ("PerformNetworkCorrelation")

hi bro.

I am working on MicrobiomeAnalyst in R studio.

However, although there are no other problems, a problem occurs in the network plot.

My use command

mbSet ← PrepareCorrExpValues(mbSet, “GROUP”, “Genus”, “dbgr”, “reingold-tilford”, “all”, “0.05”)

mbSet ← PerformNetworkCorrelation(mbSet,“Genus”, “secom_p1”, “expr”,100, 0.05, 0.3, “mean”, “Genus_corr”)

If this problem is solved, everything will be perfect.

The problem is as follows:

  1. They said they couldn’t find the function “PrepareCorrExpValues”, so they proceeded by entering the function manually.
    (Reference: https://github.com/xia-lab/MicrobiomeAnalystR/blob/master/R/mdp_utils.R)
    Then it works normally.

  2. After this, proceed with “PerformNetworkCorrelation”, but the following error occurs.
    “2 nodes produced errors; first error: object ‘.doSnowGlobals’ not found”

Please suggest the cause of the problem and a solution.

Thank you in advance.

I have exactly the same problem, but I can not make PrepareCorrExpValues work manually.