Proteomics Data Analysis with Small Sample Sizes (N = 2 vs. N = 3)

ProteoAnalyst
1

Can I perform the analysis using ProteoAnalyst if I have two biological replicates in the control group (N = 2) and three biological replicates in the experimental group (N = 3)?

2

I believe the web interface enforces a minimum sample size limit (3 per group). You can either

  1. Do it in ProteoAnalystR - you need to know R; or
  2. Use OmicsAssist, which allows you to perform flexible conversational data analysis via text or voice, including the ability to override default parameters
3

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