PlotLEfSeSummary - Dot Plot - not working for MicrobiomeAnalyst in R 4.3.1?

Hi,
I am using MicrobiomeAnalyst in R and am having a problem creating the dot plot for the LEfSe analysis, the following error appears:

mbSet<-PlotLEfSeSummary(mbSet, 15, “dot”, "LEfSe_dotPlot,“png”)
Error in CleanTaxaNames(mbSetObj, vip.nms) : unused argument (vip.nms)

Unfortunately i have not found a workaround yet… Maybe someone can help me
The bar plot works fine

Thanks for the note. This issue is related to duplicate functional names introduced recently. It should be resolved now. You can pull the GitHub again to rebuild the package.

1 Like

This topic was automatically closed after 40 hours. New replies are no longer allowed.