Hi,
I am using MicrobiomeAnalyst in R and am having a problem creating the dot plot for the LEfSe analysis, the following error appears:
mbSet<-PlotLEfSeSummary(mbSet, 15, “dot”, "LEfSe_dotPlot,“png”)
Error in CleanTaxaNames(mbSetObj, vip.nms) : unused argument (vip.nms)
Unfortunately i have not found a workaround yet… Maybe someone can help me
The bar plot works fine