Number of permutations in PERMANOVA analysis

How many permutations are used to calculate the statistical metrics on the beta-diversity analysis when using permutational manova?

Hello, the Permutational MANOVA for accessing beta-diversity significance in MicrobiomeAnalyst was calculated using the function adonis2 from the vegan package. The default permutations is 999. You can refer to R: Permutational Multivariate Analysis of Variance Using....

Hope this helps.

1 Like

Thank you so much! This helps a lot.