Nanopore

MicrobiomeAnalyst
1

Hi,

I have a question regarding FASTQ files obtained after nanopore sequencing (FASTQ-> ASV table). Is it possible to process such raw data, because the instruction (R1.fastq/R2.fastq) indicates that MicrobiomeAnalyst pipeline can only process data obtained on the illumina platform. I will be grateful for your help.

Best,

Sebastian

2

The pipeline is based on DADA2 approach which is mainly for illumina

3

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