How it's possible to draw a simple scatter plot not just 3D scatter plot?

[Atiyeh]

is it available in NetworkAnalyst to draw simple scatter plot with just X and Y arrows to show downstream and upstream expression of genes(treated) in comparison with control?

[jess.ewald]

Hi Atiyeh,

I’m not sure I understand what you are referring to. We have moved our general gene expression analysis tools to ExpressAnalyst. On the “Sig. Genes” page, there is a table with all differential expression results. There are image icons beside each gene - you can click them to generate violin plots with individual expression values for each sample. The y-axis shows expression values, and the x-axis shows treatment groups. Is this what you are looking for?

Thanks,
Jessica

[jeff.xia]

• For individual genes => box plot or violin plot
• For summary across all genes => volcano plot

An example output from ExpressAnalyst is shown below. You can click a data point in volcano plot to view its expression pattern as a violin plot