I have a problem uploading transcriptomics data in OmicsAnalyst using Emseble Gene IS. The file is in csv format but it gives the error “Missing values detected”. But the file does not have missing values. I do not have the problem with the metabolomics data.
Below is part is a small part of the data.
Thanks for developing this tool; it would be perfect to finalize the analysis of my multi-omics data set.
However, I am encountering a similar issue as described above.
When using OmicsAnalyst (Chrome or Edge browser), I can upload the metadata table without error. When I upload the transcriptomics sample data, there is no error. When I upload my transcriptionomics table (normalized data from ExpressAnalyst, attached), I encounter an error. It says: “Missing values detected in normalized_rnaseq_Day5Dose3. csv. Please upload fully processed data.”
When inspecting the data table, it looks exactly like the sample file from the Diabetes sample set. I have inspected the data tables in R and cannot detect a difference or any missing values.
Any input on what is wrong with the data table would be much appreciated.
I attach the data table of my normalized RNAseq data (normalized_rnaseq_Day5Dose3.csv)
Would you please share the metadata as well so we can reproduce the error on our end? This is only for troubleshooting purposes. If you’d rather not upload it here, feel free to email it to me directly (yao.lu5@mail.mcgill.ca).
The uploading issue has been fixed now. Please try again with your data. Currently, enrichment analysis is only supported for human and mouse, but all other analyses should all work.