Downstream processing of long read sequencing data

Hi there, can I use MicrobiomeAnalyst for downstream processing/analysis of sequencing data (long reads) classified using Kraken.

MicrobiomeAnalyst accepts many data formats . I assume Kraken will generate any generic output files like most other tools. Please inform us if this is the case.

Thank you for the response.

Yes, Kraken generates a Taxonomic profiling abundance table and I suppose from this one can create an OTU table and a Taxonomy table to use in MicrobiomeAnalyst.

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