Hi there, can I use MicrobiomeAnalyst for downstream processing/analysis of sequencing data (long reads) classified using Kraken.
MicrobiomeAnalyst accepts many data formats . I assume Kraken will generate any generic output files like most other tools. Please inform us if this is the case.
Thank you for the response.
Yes, Kraken generates a Taxonomic profiling abundance table and I suppose from this one can create an OTU table and a Taxonomy table to use in MicrobiomeAnalyst.
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