DESeq2 not available to ExpressionAnalyst

ExpressAnalyst
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1

Good night everyone,

I am trying to perform a RNA seq using ExpressionAnalyst but the DESeq2 is not available (just edgeR).
Has Anyone had the same problem?
How can I solve this problem, please?
Thank you for helping,
Regards,
Álvaro Rios.

2

If your dataset has more than 100 samples, DESeq2 will be disabled due to our limited computation resources.

Guangyan

1 Like
3

Thank you Guangyan,

If i run in R? Can I analyze more than 100 samples?
Regards,
Álvaro.

4

I’m not sure - I think that the limitation is invoked outside of R, so you may be able to process more samples with ExpressAnalystR.

An alternative is to use the DESeq2 R package. There are no sample size limitations here.