DESeq2 not available to ExpressionAnalyst

Good night everyone,

I am trying to perform a RNA seq using ExpressionAnalyst but the DESeq2 is not available (just edgeR).
Has Anyone had the same problem?
How can I solve this problem, please?
Thank you for helping,
Álvaro Rios.

If your dataset has more than 100 samples, DESeq2 will be disabled due to our limited computation resources.


Thank you Guangyan,

If i run in R? Can I analyze more than 100 samples?

I’m not sure - I think that the limitation is invoked outside of R, so you may be able to process more samples with ExpressAnalystR.

An alternative is to use the DESeq2 R package. There are no sample size limitations here.